In Silico Characterization and Determination of Gene Expression Levels Under Saline Stress Conditions in the Zinc Finger Family of the C1-2i Subclass in Chenopodium quinoa Willd

Alvarez-Vasquez A.; Lima-Huanca L.; Bardales-álvarez R.; Valderrama-Valencia M.; Condori-Pacsi S. · International Journal of Molecular Sciences (2025) · DOI: 10.3390/ijms26062570

Resumen

Quinoa (Chenopodium quinoa) is recognized for its tolerance to abiotic stress, including salinity, and its recent genome sequencing has facilitated the study of the mechanisms underlying this adaptation. This study focused on characterizing the ZAT genes of the C2H2 subfamily in quinoa, evaluating their expression under saline stress. Eight ZAT genes were identified and analyzed in silico using genomic databases and bioinformatics tools, assessing their conserved domains, cis-regulatory motifs, and physicochemical characteristics. Additionally, germination assays, hydroponic cultivation, and gene expression analyses via qPCR were performed on halotolerant (UNSA_VP033) and halosensitive (UNSA_VP021) accessions exposed to different NaCl concentrations. The genes CqZAT4 and CqZAT6 showed high expression in the halotolerant accession under saline stress, correlating with increased dry matter, root length, and water retention. In contrast, the halosensitive accession exhibited lower tolerance, with significant reductions in these metrics. Promoter analysis revealed cis-elements associated with hormonal and stress responses. ZAT genes play a key role in quinoa’s response to saline stress, with CqZAT4 and CqZAT6 standing out in the halotolerant accession. These findings could drive the development of more resilient varieties, contributing to agricultural sustainability in saline soils.

Instituciones: Universidad Nacional de San Agustín de Arequipa